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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
70
total RNA-seq
10
ATAC-seq
2
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
394
DNA binding
70
Transcription
11
DNA accessibility
2
3D chromatin structure
Target of assay
351
transcription factor
85
recombinant protein
61
RNA binding protein
30
chromatin remodeller
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
266
November, 2017
67
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
18
October, 2019
2
March, 2020
1
January, 2018
Available data
467
bigWig
460
bam
385
bed narrowPeak
367
fastq
350
bigBed narrowPeak
70
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
478
Homo sapiens
Biosample type
1742
tissue
478
cell line
401
primary cell
277
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
epithelium
12
kidney
8
embryo
Project
478
AMP
Genome assembly (visualization)
478
hg19
415
GRCh38
Lab
463
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
tagAlign bed3+
lab.title!
Maike Sander, UCSD
organ_slims!
epithelium
BIOSAMPLE
ASSAY
478 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
H1-hESC
8
Panc1
6
1
1
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