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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
345
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
235
November, 2017
83
February, 2021
33
November, 2018
25
December, 2018
21
August, 2021
20
October, 2019
14
January, 2019
11
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
455
bigWig
448
bam
338
bed narrowPeak
307
fastq
291
bigBed narrowPeak
105
tsv
55
bed broadPeak
55
bigBed broadPeak
17
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
hdf5
Organism
455
Homo sapiens
Biosample type
1625
tissue
586
primary cell
455
cell line
248
in vitro differentiated cells
2
stem cell
Organ
276
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
pancreas
49
epithelium
45
blood
45
bodily fluid
12
kidney
8
embryo
Project
451
AMP
4
T1D
Genome assembly (visualization)
455
hg19
396
GRCh38
Lab
442
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
57
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
455 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
271
5
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
12
33
2
GM12878
44
1
H1-hESC
8
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