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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
103
ChIP-seq
40
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
127
Transcription
103
DNA binding
40
DNA accessibility
4
3D chromatin structure
Target of assay
65
histone
65
histone modification
35
narrow histone mark
35
transcription factor
29
broad histone mark
5
control
4
RNA binding protein
chromatin remodeller
Date released
89
May, 2021
46
August, 2017
33
August, 2021
31
February, 2018
26
February, 2021
24
December, 2017
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
Available data
261
bam
251
bigWig
128
bed narrowPeak
127
tsv
115
fastq
25
bed bed3+
17
tagAlign
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
278
Homo sapiens
Biosample type
1260
tissue
526
primary cell
278
in vitro differentiated cells
164
cell line
3
stem cell
Organ
68
connective tissue
21
embryo
6
epithelium
2
pancreas
1
heart
Project
278
AMP
Genome assembly (visualization)
278
hg19
248
GRCh38
4
hg18
Lab
266
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
108
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
bigBed narrowPeak
lab.title!
Bing Ren, UCSD
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
278 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
46
6
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
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