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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
42
ATAC-seq
38
ChIP-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
43
DNA accessibility
38
DNA binding
4
3D chromatin structure
Target of assay
histone
64
histone modification
33
transcription factor
32
narrow histone mark
31
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
26
February, 2021
24
August, 2017
21
August, 2021
15
December, 2017
15
February, 2018
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
187
bam
177
bigWig
127
tsv
54
bed narrowPeak
54
fastq
17
bed bed3+
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
tagAlign
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
216
Homo sapiens
Biosample type
1301
tissue
433
cell line
397
primary cell
216
in vitro differentiated cells
1
stem cell
Organ
48
connective tissue
10
embryo
4
epithelium
2
liver
1
heart
Project
216
AMP
Genome assembly (visualization)
216
hg19
183
GRCh38
4
hg18
Lab
204
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
103
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
tagAlign
month_released!
November, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
8
23
1
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
induced pluripotent stem cell
9
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