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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
42
ChIP-seq
37
ATAC-seq
4
Hi-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
42
DNA binding
38
DNA accessibility
4
3D chromatin structure
Target of assay
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
88
May, 2021
26
February, 2021
24
August, 2017
17
August, 2021
15
December, 2017
15
February, 2018
9
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
187
bam
172
bigWig
127
tsv
54
fastq
50
bed narrowPeak
15
bed bed3+
6
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
bed bedgraph
4
hic
4
tagAlign
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
213
Homo sapiens
Biosample type
1301
tissue
439
cell line
398
primary cell
213
in vitro differentiated cells
1
stem cell
Organ
44
connective tissue
10
embryo
5
epithelium
2
liver
1
heart
1
pancreas
Project
213
AMP
Genome assembly (visualization)
213
hg19
187
GRCh38
4
hg18
Lab
208
AMP-T2D consortium
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
month_released!
November, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
213 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
23
7
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
induced pluripotent stem cell
9
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