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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127total RNA-seq
  • 119ChIP-seq
  • 42ATAC-seq
  • 4Hi-C
  • 2Capture-C
  • 2pCHi-C
  • 1DNase-seq
Assay category
  • 127Transcription
  • 119DNA binding
  • 43DNA accessibility
  • 43D chromatin structure
Target of assay
  • 77histone
  • 77histone modification
  • 40narrow histone mark
  • 37transcription factor
  • 36broad histone mark
  • 6RNA binding protein
  • 5control
  • 3chromatin remodeller
Date released
  • 89May, 2021
  • 49August, 2017
  • 38December, 2017
  • 33August, 2021
  • 31February, 2018
  • 26February, 2021
  • 12February, 2023
  • 8October, 2019
  • 6March, 2020
  • 5November, 2019
Available data
  • 264bam
  • 254bigWig
  • 131bed narrowPeak
  • 127tsv
  • 118fastq
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 17tagAlign
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 297Homo sapiens
Biosample type
  • 1755tissue
  • 628primary cell
  • 530cell line
  • 297in vitro differentiated cells
  • 3stem cell
Organ
  • 73connective tissue
  • 21embryo
  • 20epithelium
  • 14liver
  • 2pancreas
  • 1heart
Project
  • 297AMP
Genome assembly (visualization)
  • 297hg19
  • 265GRCh38
  • 4hg18
Lab
  • 285AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 5Kyle Gaulton, UCSD
Audit category:
  • 108inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 17inconsistent control read length
BIOSAMPLE
ASSAY

297 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte448811
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
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