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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
9
ChIP-seq
5
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
15
Transcription
9
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
13
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
Available data
32
bam
31
bigWig
16
bed narrowPeak
15
tsv
14
bigBed narrowPeak
7
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
34
Homo sapiens
Biosample type
482
tissue
in vitro differentiated cells
34
primary cell
Organ
epithelium
185
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
34 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
2
1
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
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