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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ATAC-seq
19
RRBS
16
Hi-C
5
ChIP-seq
1
pCHi-C
1
snATAC-seq
1
total RNA-seq
Assay category
98
DNA accessibility
19
DNA methylation
16
3D chromatin structure
5
DNA binding
1
Transcription
Target of assay
3
control
2
histone
2
histone modification
2
narrow histone mark
Date released
33
February, 2023
21
November, 2019
19
May, 2022
15
July, 2019
13
May, 2021
9
February, 2021
8
March, 2020
6
October, 2019
5
August, 2017
3
March, 2019
3
October, 2022
2
September, 2017
1
August, 2021
1
May, 2023
1
November, 2020
Available data
bigWig
2205
bam
1170
tsv
1048
bed narrowPeak
578
bigBed narrowPeak
503
fastq
229
bed broadPeak
210
bed bed3+
204
tagAlign
193
bigBed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
hic
13
bedpe bed3+
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
txt
Organism
140
Homo sapiens
Biosample type
108
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
49
pancreas
28
eye
24
epithelium
12
bone element
12
skeleton
6
connective tissue
6
limb
6
musculature of body
5
brain
5
heart
5
kidney
5
liver
4
vasculature
3
adipose tissue
3
blood vessel
2
vein
1
pericardium
Project
137
AMP
3
HPAP
Genome assembly (visualization)
164
GRCh38
140
hg19
Lab
115
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
5
audit script error
5
inconsistent ontology term
files.file_type!
bigWig
month_released!
November, 2018
BIOSAMPLE
ASSAY
140 results
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ATAC-seq
RRBS
Hi-C
ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
39
1
2
2
retina
15
pigmented layer of retina
12
liver
1
1
1
skeletal muscle tissue
2
1
+ See 25 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
2
osteoblast
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
+ See 13 more…
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