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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
41
ATAC-seq
5
Hi-C
Assay category
117
DNA binding
98
Transcription
41
DNA accessibility
5
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
170
May, 2021
45
May, 2020
38
May, 2022
3
March, 2019
3
October, 2022
1
August, 2021
1
October, 2017
Available data
236
bigWig
198
bam
152
bed narrowPeak
96
tsv
84
tagAlign
19
fastq
5
hic
3
bedpe bed3+
3
cool
2
bed bed3+
1
bed broadPeak
1
bedpe
Organism
261
Homo sapiens
Biosample type
218
primary cell
43
tissue
15
cell line
12
in vitro differentiated cells
Organ
25
pancreas
20
liver
3
epithelium
1
kidney
Project
180
T1D
78
AMP
3
HPAP
Genome assembly (visualization)
309
GRCh38
261
hg19
Lab
AMP-T2D consortium
233
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
organ_slims!
intestine
BIOSAMPLE
ASSAY
261 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
tissue
islet of Langerhans
21
1
liver
20
kidney
1
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