Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
111
total RNA-seq
61
ATAC-seq
30
single cell RNA-seq
12
DNase-seq
2
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
177
DNA binding
143
Transcription
73
DNA accessibility
2
3D chromatin structure
Target of assay
167
histone
167
histone modification
89
broad histone mark
78
narrow histone mark
8
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
29
August, 2017
28
June, 2019
15
July, 2018
14
July, 2019
11
September, 2018
10
April, 2018
6
November, 2020
3
February, 2021
3
November, 2017
2
June, 2018
1
October, 2019
Available data
380
bigWig
359
bam
188
bed narrowPeak
141
tsv
96
tagAlign
69
fastq
47
bigBed narrowPeak
26
bed broadPeak
26
bigBed broadPeak
15
bed bed3+
bed bedMethyl
4
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
396
Homo sapiens
Biosample type
1664
tissue
414
cell line
396
primary cell
277
in vitro differentiated cells
3
stem cell
Organ
epithelium
185
pancreas
33
connective tissue
30
vasculature
blood vessel
22
kidney
20
brain
17
vein
12
liver
11
musculature of body
9
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
216
AMP
180
T1D
Genome assembly (visualization)
396
hg19
310
GRCh38
Lab
215
Kyle Gaulton, UCSD
181
AMP-T2D consortium
Audit category:
33
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed bedMethyl
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
396 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
2
osteoblast
5
2
1
1
+ See 50 more…
See all biosamples
Download