Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
10
RRBS
5
Hi-C
1
pCHi-C
Assay category
16
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Date released
13
May, 2021
9
July, 2019
3
October, 2019
3
October, 2022
1
August, 2017
1
February, 2021
1
March, 2020
1
November, 2020
Available data
bigWig
382
bam
207
tsv
186
fastq
184
bed narrowPeak
76
bigBed narrowPeak
52
tagAlign
34
bed broadPeak
34
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
32
Homo sapiens
Biosample type
106
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
12
epithelium
3
connective tissue
3
kidney
3
pancreas
3
vasculature
2
blood vessel
2
liver
2
vein
1
brain
1
eye
1
heart
1
musculature of body
Project
29
AMP
3
HPAP
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
29
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
4
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
RRBS
Hi-C
pCHi-C
primary cell
monocyte
13
endothelial cell of umbilical vein
2
osteoblast
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
+ See 13 more…
See all biosamples
Download