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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
22
ATAC-seq
22
DNase-seq
1
FAIRE-seq
Assay category
57
DNA binding
45
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
40
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
596
bigWig
574
bam
288
bed narrowPeak
252
tsv
226
fastq
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
102
Homo sapiens
Biosample type
493
tissue
351
cell line
102
primary cell
17
in vitro differentiated cells
Organ
55
epithelium
22
pancreas
20
vasculature
16
blood vessel
14
connective tissue
13
vein
11
brain
10
kidney
9
musculature of body
5
heart
3
eye
2
liver
Project
102
AMP
Genome assembly (visualization)
105
GRCh38
102
hg19
Lab
102
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
October, 2022
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
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