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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
17
ChIP-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
253
Transcription
107
DNA accessibility
17
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
230
histone
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
70
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
30
July, 2019
21
June, 2019
9
August, 2017
8
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
May, 2019
Available data
373
bam
365
bigWig
251
tsv
153
fastq
72
bed narrowPeak
55
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign
1
tar
Organism
394
Homo sapiens
Biosample type
1316
tissue
493
cell line
394
primary cell
220
in vitro differentiated cells
1
stem cell
Organ
161
epithelium
124
pancreas
26
connective tissue
18
brain
17
vasculature
15
kidney
12
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
3
eye
2
adipose tissue
2
artery
pericardium
Project
298
AMP
96
T1D
Genome assembly (visualization)
394
hg19
327
GRCh38
Lab
293
AMP-T2D consortium
101
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
organ_slims!
pericardium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
394 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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