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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
129
ChIP-seq
84
ATAC-seq
57
single cell RNA-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
211
Transcription
129
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
narrow histone mark
7
RNA binding protein
7
control
7
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
90
May, 2020
57
September, 2018
48
July, 2018
April, 2018
31
July, 2019
29
June, 2019
25
August, 2017
18
October, 2019
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
435
bigWig
423
bam
209
tsv
181
bed narrowPeak
142
fastq
73
bigBed narrowPeak
52
tagAlign
31
bed broadPeak
31
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
467
Homo sapiens
Biosample type
1508
tissue
467
primary cell
257
in vitro differentiated cells
252
cell line
2
stem cell
Organ
156
epithelium
121
pancreas
28
connective tissue
20
kidney
20
vasculature
17
blood vessel
12
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
324
AMP
140
T1D
3
HPAP
Genome assembly (visualization)
467
hg19
388
GRCh38
Lab
299
AMP-T2D consortium
165
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
April, 2018
November, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
467 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
44
15
pancreatic beta cell
10
3
7
9
1
CD8-positive, alpha-beta T cell
4
23
2
pancreatic alpha cell
10
3
6
9
1
pancreatic acinar cell
4
4
5
6
1
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