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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
130
ChIP-seq
82
ATAC-seq
50
single cell RNA-seq
17
DNase-seq
9
RRBS
8
Hi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
193
Transcription
130
DNA binding
100
DNA accessibility
9
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
114
broad histone mark
narrow histone mark
10
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
90
May, 2020
57
September, 2018
July, 2018
41
April, 2018
25
August, 2017
23
July, 2019
20
June, 2019
18
October, 2019
6
November, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
411
bigWig
398
bam
191
tsv
172
bed narrowPeak
137
fastq
66
bigBed narrowPeak
52
tagAlign
29
bed broadPeak
29
bigBed broadPeak
21
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
440
Homo sapiens
Biosample type
920
tissue
511
cell line
440
primary cell
196
in vitro differentiated cells
2
stem cell
Organ
160
epithelium
117
pancreas
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
297
AMP
140
T1D
3
HPAP
Genome assembly (visualization)
440
hg19
360
GRCh38
Lab
272
AMP-T2D consortium
165
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
FAIRE-seq
small RNA-seq
primary cell
monocyte
53
44
15
CD8-positive, alpha-beta T cell
4
23
2
pancreatic alpha cell
10
3
6
5
1
pancreatic beta cell
10
3
7
3
1
pancreatic acinar cell
4
4
5
7
1
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