Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
17
ChIP-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
107
DNA accessibility
17
DNA binding
10
DNA methylation
9
3D chromatin structure
Target of assay
230
histone
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
70
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
31
July, 2019
21
June, 2019
9
August, 2017
8
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
May, 2019
Available data
374
bam
366
bigWig
252
tsv
153
fastq
72
bed narrowPeak
55
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign
1
tar
Organism
398
Homo sapiens
Biosample type
1317
tissue
439
cell line
398
primary cell
220
in vitro differentiated cells
1
stem cell
Organ
164
epithelium
127
pancreas
26
connective tissue
18
brain
17
vasculature
15
kidney
12
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
299
AMP
96
T1D
3
HPAP
Genome assembly (visualization)
398
hg19
338
GRCh38
Lab
294
AMP-T2D consortium
101
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
4
audit script error
organ_slims!
bodily fluid
thymus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
398 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
1
pancreatic alpha cell
10
12
6
1
pancreatic acinar cell
4
12
5
1
pancreatic ductal cell
4
10
4
+ See 71 more…
See all biosamples
Download