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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
204
ChIP-seq
119
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
1
snATAC-seq
Assay category
918
Transcription
204
DNA binding
120
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
178
histone modification
177
histone
147
narrow histone mark
30
broad histone mark
23
transcription factor
3
control
2
RNA binding protein
Date released
452
February, 2021
170
May, 2020
158
August, 2017
116
July, 2018
116
October, 2019
58
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
33
February, 2023
18
March, 2020
7
October, 2017
6
April, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
April, 2019
1
August, 2021
1
May, 2023
1
November, 2017
Available data
1648
bam
1647
bigWig
918
tsv
777
bed narrowPeak
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1262
Homo sapiens
Biosample type
1262
tissue
522
primary cell
280
in vitro differentiated cells
179
cell line
stem cell
Organ
472
connective tissue
414
adipose tissue
353
pancreas
219
liver
89
brain
70
bone element
27
eye
27
heart
23
musculature of body
12
epithelium
12
limb
12
skeleton
8
blood vessel
8
vasculature
6
kidney
5
nerve
2
artery
1
pericardium
1
pituitary gland
1
spleen
Project
1260
AMP
2
T1D
Genome assembly (visualization)
1304
GRCh38
1262
hg19
Lab
1219
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
22
missing controlled_by
biosample_type!
stem cell
files.file_type!
bigBed narrowPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
1262 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
islet of Langerhans
260
31
42
2
1
6
liver
147
45
20
1
1
1
bone tissue
58
skeletal muscle tissue
1
13
1
1
2
1
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