Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
499
ChIP-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
918
Transcription
499
DNA binding
127
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
426
histone modification
425
histone
233
narrow histone mark
192
broad histone mark
75
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
159
October, 2019
154
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
38
May, 2021
38
May, 2022
34
December, 2017
33
February, 2023
18
March, 2020
13
October, 2017
8
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
1
August, 2021
1
May, 2023
Available data
1646
bam
1645
bigWig
918
tsv
775
bed narrowPeak
491
bigBed narrowPeak
292
fastq
196
bed broadPeak
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1558
Homo sapiens
Biosample type
1564
tissue
597
primary cell
497
cell line
269
in vitro differentiated cells
Organ
476
connective tissue
418
adipose tissue
388
pancreas
260
liver
126
brain
88
heart
70
bone element
65
blood vessel
65
vasculature
60
limb
29
nerve
28
musculature of body
27
eye
25
kidney
23
artery
13
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1562
AMP
2
T1D
Genome assembly (visualization)
1653
GRCh38
1564
hg19
Lab
1521
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
lab.title!
Xin Sun, UCSD
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1564 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
10
42
2
1
6
1
1
liver
147
78
20
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
+ See 129 more…
See all biosamples
Download