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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
494
ChIP-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
3
FAIRE-seq
1
DNase-seq
Assay category
918
Transcription
494
DNA binding
126
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
426
histone modification
425
histone
233
narrow histone mark
192
broad histone mark
68
transcription factor
20
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
159
October, 2019
154
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
38
May, 2021
38
May, 2022
36
December, 2017
33
February, 2023
18
March, 2020
13
October, 2017
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
1
August, 2021
1
May, 2023
Available data
1631
bam
1630
bigWig
918
tsv
760
bed narrowPeak
476
bigBed narrowPeak
277
fastq
187
bed broadPeak
bed bed3+
151
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1552
Homo sapiens
Biosample type
1558
tissue
598
primary cell
473
cell line
272
in vitro differentiated cells
Organ
476
connective tissue
418
adipose tissue
387
pancreas
258
liver
126
brain
88
heart
70
bone element
65
blood vessel
65
vasculature
60
limb
29
nerve
28
musculature of body
27
eye
25
kidney
23
artery
12
epithelium
12
skeleton
10
spleen
1
pericardium
1
pituitary gland
Project
1556
AMP
2
T1D
Genome assembly (visualization)
1642
GRCh38
1558
hg19
Lab
1515
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
month_released!
November, 2018
BIOSAMPLE
ASSAY
1558 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
10
42
2
1
6
1
1
liver
147
76
20
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
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