Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
722
total RNA-seq
502
ChIP-seq
161
DNase-seq
112
ATAC-seq
11
Hi-C
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
1
snATAC-seq
Assay category
728
Transcription
502
DNA binding
276
DNA accessibility
11
3D chromatin structure
3
DNA methylation
Target of assay
411
histone modification
410
histone
212
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
28
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1424
bam
1423
bigWig
743
bed narrowPeak
728
tsv
491
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
78
tagAlign
11
hic
9
bedpe bed3+
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1514
Homo sapiens
Biosample type
1520
tissue
529
cell line
506
primary cell
292
in vitro differentiated cells
3
stem cell
Organ
472
connective tissue
414
adipose tissue
407
pancreas
132
brain
101
heart
96
limb
91
liver
88
kidney
66
bone element
65
blood vessel
65
vasculature
59
musculature of body
31
nerve
30
eye
26
artery
18
ureter
14
spleen
12
epithelium
8
skeleton
1
pituitary gland
Project
1518
AMP
2
T1D
Genome assembly (visualization)
1636
GRCh38
1520
hg19
Lab
1477
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
month_released!
July, 2019
May, 2020
BIOSAMPLE
ASSAY
1520 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
6
1
liver
2
56
2
20
1
1
bone tissue
58
heart left ventricle
1
29
3
1
+ See 132 more…
See all biosamples
Download