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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
161
DNase-seq
121
ATAC-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
1
total RNA-seq
Assay category
529
DNA binding
287
DNA accessibility
11
3D chromatin structure
9
DNA methylation
1
Transcription
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
155
October, 2019
147
June, 2019
93
May, 2019
91
August, 2017
65
April, 2019
45
October, 2018
39
May, 2022
36
December, 2017
33
February, 2023
27
May, 2020
21
November, 2019
17
November, 2018
13
July, 2019
13
October, 2017
10
March, 2020
8
February, 2021
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1648
bam
1647
bigWig
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
831
Homo sapiens
Biosample type
837
tissue
425
cell line
376
primary cell
170
in vitro differentiated cells
3
stem cell
Organ
141
pancreas
134
brain
116
liver
100
heart
92
limb
90
kidney
66
blood vessel
66
vasculature
57
musculature of body
30
eye
28
adipose tissue
28
connective tissue
27
artery
27
nerve
18
ureter
14
spleen
12
bone element
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
835
AMP
2
T1D
Genome assembly (visualization)
942
GRCh38
837
hg19
Lab
794
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
837 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
total RNA-seq
tissue
liver
83
2
20
1
1
islet of Langerhans
31
1
41
2
1
1
heart left ventricle
29
3
2
1
1
kidney
20
13
1
1
1
body of pancreas
26
2
4
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