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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
17
DNase-seq
5
total RNA-seq
4
small RNA-seq
1
FAIRE-seq
Assay category
111
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
111
histone
111
histone modification
86
narrow histone mark
25
broad histone mark
Date released
76
October, 2019
25
May, 2019
15
June, 2019
9
July, 2019
6
October, 2017
5
November, 2017
2
November, 2018
Available data
139
bigWig
138
bam
130
bed narrowPeak
54
bigBed narrowPeak
43
tagAlign
26
bed broadPeak
17
bed bed3+
17
bigBed broadPeak
9
tsv
8
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
138
Homo sapiens
Biosample type
138
tissue
17
primary cell
Organ
477
connective tissue
419
adipose tissue
397
pancreas
246
liver
138
brain
108
heart
96
limb
90
kidney
69
blood vessel
69
vasculature
66
bone element
42
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
8
skeleton
3
eye
1
pituitary gland
Project
138
AMP
Genome assembly (visualization)
201
GRCh38
138
hg19
Lab
138
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
intestine
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
FAIRE-seq
tissue
brain
11
14
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
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