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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
156
DNase-seq
106
ATAC-seq
4
FAIRE-seq
Assay category
446
DNA binding
266
DNA accessibility
Target of assay
379
histone modification
378
histone
217
narrow histone mark
161
broad histone mark
67
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
144
June, 2019
130
October, 2019
66
August, 2017
65
April, 2019
54
May, 2019
45
October, 2018
38
May, 2022
36
December, 2017
28
February, 2023
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
6
November, 2017
5
July, 2019
3
December, 2018
2
March, 2020
Available data
1579
bam
1578
bigWig
914
tsv
712
bed narrowPeak
431
bigBed narrowPeak
294
fastq
191
bed broadPeak
184
bed bed3+
155
bigBed broadPeak
105
tagAlign
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
706
Homo sapiens
Biosample type
712
tissue
388
cell line
268
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
130
brain
121
pancreas
113
liver
96
heart
92
limb
88
kidney
65
blood vessel
vasculature
51
musculature of body
30
eye
27
artery
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
710
AMP
2
T1D
Genome assembly (visualization)
783
GRCh38
712
hg19
Lab
674
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
lymph node
vasculature
BIOSAMPLE
ASSAY
712 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
islet of Langerhans
20
1
37
1
heart left ventricle
29
3
2
kidney
20
13
1
body of pancreas
26
2
4
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