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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
total RNA-seq
524
ChIP-seq
161
DNase-seq
41
ATAC-seq
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
879
Transcription
524
DNA binding
206
DNA accessibility
Target of assay
436
histone modification
435
histone
237
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
160
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
54
July, 2019
45
October, 2018
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
13
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
2
January, 2018
Available data
1610
bam
1609
bigWig
880
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1603
Homo sapiens
Biosample type
1609
tissue
512
cell line
425
primary cell
165
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
331
pancreas
265
liver
139
brain
107
heart
90
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
56
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
1607
AMP
2
T1D
Genome assembly (visualization)
1674
GRCh38
1609
hg19
Lab
1588
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
organ_slims!
thymus
BIOSAMPLE
ASSAY
1609 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
224
29
1
3
6
1
liver
147
82
2
20
1
bone tissue
58
heart left ventricle
3
29
3
2
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