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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
91
total RNA-seq
27
ATAC-seq
10
DNase-seq
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
155
DNA binding
97
Transcription
39
DNA accessibility
3
DNA methylation
Target of assay
79
transcription factor
73
histone modification
72
histone
44
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
August, 2017
36
December, 2017
31
October, 2018
18
May, 2022
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
July, 2018
2
September, 2017
Available data
1478
bam
1477
bigWig
775
tsv
750
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
78
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
288
Homo sapiens
Biosample type
367
cell line
294
tissue
226
primary cell
118
in vitro differentiated cells
3
stem cell
Organ
186
pancreas
63
liver
21
adipose tissue
21
connective tissue
14
spleen
8
brain
2
musculature of body
Project
294
AMP
Genome assembly (visualization)
294
hg19
280
GRCh38
Lab
275
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
month_released!
May, 2020
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
23
91
19
1
6
1
liver
51
2
1
body of pancreas
25
4
2
pancreas
13
1
spleen
12
1
1
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