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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
91
total RNA-seq
27
ATAC-seq
10
DNase-seq
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
111
DNA binding
97
Transcription
39
DNA accessibility
3
DNA methylation
Target of assay
79
transcription factor
73
histone modification
72
histone
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
139
August, 2017
33
December, 2017
20
October, 2018
18
May, 2022
17
November, 2018
8
October, 2017
6
April, 2018
3
December, 2018
2
January, 2019
2
July, 2018
2
September, 2017
Available data
1292
bam
1279
bigWig
775
tsv
553
bed narrowPeak
325
bigBed narrowPeak
250
fastq
183
bed bed3+
176
bed broadPeak
160
bigBed broadPeak
55
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
248
Homo sapiens
Biosample type
359
cell line
250
tissue
193
primary cell
87
in vitro differentiated cells
2
stem cell
Organ
161
pancreas
53
liver
21
adipose tissue
21
connective tissue
10
spleen
3
brain
2
musculature of body
Project
250
AMP
Genome assembly (visualization)
250
hg19
236
GRCh38
Lab
231
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
17
91
19
1
6
1
liver
44
2
1
body of pancreas
14
4
2
white adipose tissue
12
spleen
8
1
1
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