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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
753
total RNA-seq
502
ChIP-seq
121
ATAC-seq
16
small RNA-seq
14
DNase-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
775
Transcription
502
DNA binding
140
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
411
histone modification
410
histone
212
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
May, 2020
163
October, 2019
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
2
January, 2018
2
September, 2017
1
August, 2021
1
March, 2019
1
May, 2023
Available data
1331
bam
1330
bigWig
775
tsv
603
bed narrowPeak
346
bigBed narrowPeak
294
fastq
78
tagAlign
49
bed broadPeak
42
bed bed3+
13
bigBed broadPeak
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
tagAlign bed3+
1
txt
Organism
1430
Homo sapiens
Biosample type
1436
tissue
515
cell line
498
primary cell
297
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
409
pancreas
128
brain
98
liver
88
heart
70
bone element
67
blood vessel
67
vasculature
64
limb
31
nerve
29
musculature of body
27
eye
25
artery
25
kidney
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1434
AMP
2
T1D
Genome assembly (visualization)
1533
GRCh38
1436
hg19
Lab
1395
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
month_released!
June, 2019
May, 2020
BIOSAMPLE
ASSAY
1436 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
41
1
1
1
6
1
liver
4
56
20
1
2
1
1
bone tissue
58
body of pancreas
2
26
4
2
2
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