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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
753
total RNA-seq
496
ChIP-seq
161
DNase-seq
121
ATAC-seq
16
small RNA-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
775
Transcription
496
DNA binding
287
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
405
histone modification
404
histone
208
narrow histone mark
196
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
November, 2017
3
December, 2018
2
January, 2018
2
September, 2017
1
August, 2021
1
March, 2019
1
May, 2023
Available data
1473
bam
1471
bigWig
775
tsv
744
bed narrowPeak
488
bigBed narrowPeak
294
fastq
190
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
72
tagAlign
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
tagAlign bed3+
1
txt
Organism
1571
Homo sapiens
Biosample type
1577
tissue
529
primary cell
297
in vitro differentiated cells
249
cell line
3
stem cell
Organ
482
connective tissue
424
adipose tissue
411
pancreas
137
brain
113
heart
98
liver
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1575
AMP
2
T1D
Genome assembly (visualization)
1639
GRCh38
1577
hg19
Lab
1536
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
month_released!
May, 2020
November, 2017
BIOSAMPLE
ASSAY
1577 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
41
1
1
6
1
liver
4
56
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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