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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
441
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
441
DNA binding
288
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
163
October, 2019
157
August, 2017
147
June, 2019
116
July, 2018
89
May, 2019
60
April, 2019
60
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
33
February, 2023
30
October, 2018
18
March, 2020
13
October, 2017
10
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
5
December, 2017
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1560
bam
1559
bigWig
918
tsv
707
bed narrowPeak
428
bigBed narrowPeak
215
fastq
196
bed broadPeak
176
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1661
Homo sapiens
Biosample type
1667
tissue
618
primary cell
260
in vitro differentiated cells
178
cell line
3
stem cell
Organ
465
connective tissue
407
adipose tissue
396
pancreas
229
liver
143
brain
106
heart
96
limb
92
kidney
70
bone element
67
blood vessel
67
vasculature
61
musculature of body
31
nerve
30
eye
26
artery
18
ureter
12
epithelium
12
skeleton
8
spleen
1
pericardium
1
pituitary gland
Project
1665
AMP
2
T1D
Genome assembly (visualization)
1766
GRCh38
1667
hg19
Lab
1624
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
7
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Xin Sun, UCSD
target.investigated_as!
chromatin remodeller
transcription factor
BIOSAMPLE
ASSAY
1667 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
24
1
42
2
1
6
1
liver
147
46
2
20
1
1
1
bone tissue
58
kidney
20
13
1
1
1
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