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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
436
ChIP-seq
161
DNase-seq
120
ATAC-seq
16
small RNA-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
436
DNA binding
286
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
349
histone modification
348
histone
206
narrow histone mark
142
broad histone mark
84
transcription factor
18
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1555
bam
1554
bigWig
918
tsv
684
bed narrowPeak
400
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
tagAlign bed3+
1
txt
Organism
1653
Homo sapiens
Biosample type
1659
tissue
619
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
409
pancreas
268
liver
118
brain
98
heart
92
kidney
90
limb
70
bone element
55
musculature of body
31
blood vessel
31
nerve
31
vasculature
30
eye
24
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1657
AMP
2
T1D
Genome assembly (visualization)
1765
GRCh38
1659
hg19
Lab
1619
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2019
March, 2019
May, 2019
BIOSAMPLE
ASSAY
1659 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
40
1
1
6
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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