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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
501
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
501
DNA binding
288
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
432
histone modification
431
histone
235
narrow histone mark
196
broad histone mark
88
transcription factor
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
178
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
89
May, 2019
62
April, 2019
60
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
34
December, 2017
34
October, 2018
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1621
bam
1619
bigWig
918
tsv
750
bed narrowPeak
468
bigBed narrowPeak
279
fastq
190
bed broadPeak
187
bed bed3+
160
bigBed broadPeak
99
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1721
Homo sapiens
Biosample type
1727
tissue
612
primary cell
291
in vitro differentiated cells
233
cell line
3
stem cell
Organ
477
connective tissue
419
adipose tissue
405
pancreas
266
liver
137
brain
108
heart
96
limb
92
kidney
70
bone element
67
blood vessel
67
vasculature
61
musculature of body
31
nerve
30
eye
26
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1725
AMP
2
T1D
Genome assembly (visualization)
1775
GRCh38
1727
hg19
Lab
1684
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1727 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
29
1
42
2
1
6
1
liver
147
82
2
20
1
1
1
bone tissue
58
heart left ventricle
3
26
3
2
1
1
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