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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
884
total RNA-seq
411
ChIP-seq
136
DNase-seq
118
ATAC-seq
15
small RNA-seq
8
Hi-C
8
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
905
Transcription
411
DNA binding
259
DNA accessibility
8
3D chromatin structure
8
DNA methylation
Target of assay
342
histone modification
341
histone
203
narrow histone mark
138
broad histone mark
66
transcription factor
6
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
174
August, 2017
170
May, 2020
155
October, 2019
122
June, 2019
116
July, 2018
78
May, 2019
48
July, 2019
October, 2018
40
November, 2019
39
May, 2022
36
December, 2017
36
May, 2021
33
February, 2023
18
April, 2019
17
November, 2018
14
March, 2020
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1489
bam
1487
bigWig
905
tsv
630
bed narrowPeak
356
bigBed narrowPeak
257
fastq
165
bed broadPeak
164
bed bed3+
135
bigBed broadPeak
99
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1591
Homo sapiens
Biosample type
1591
tissue
616
primary cell
466
cell line
296
in vitro differentiated cells
3
stem cell
Organ
477
connective tissue
419
adipose tissue
367
pancreas
268
liver
143
brain
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1589
AMP
2
T1D
Genome assembly (visualization)
1617
GRCh38
1591
hg19
Lab
1548
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
1591 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
1
6
1
liver
147
83
2
20
1
1
1
bone tissue
58
kidney
20
13
1
1
1
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