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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
331
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
8
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
331
DNA binding
288
DNA accessibility
11
3D chromatin structure
8
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
147
August, 2017
147
June, 2019
124
October, 2019
116
July, 2018
59
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
37
May, 2019
33
December, 2017
33
February, 2023
28
April, 2019
26
October, 2018
18
March, 2020
17
November, 2018
8
October, 2017
6
April, 2018
4
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
January, 2019
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1462
bam
1449
bigWig
918
tsv
580
bed narrowPeak
325
bigBed narrowPeak
250
fastq
183
bed bed3+
176
bed broadPeak
160
bigBed broadPeak
82
tagAlign
11
hic
9
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1554
Homo sapiens
Biosample type
1556
tissue
512
cell line
509
primary cell
261
in vitro differentiated cells
2
stem cell
Organ
482
connective tissue
424
adipose tissue
376
pancreas
255
liver
118
brain
82
kidney
76
heart
70
bone element
62
limb
49
musculature of body
34
blood vessel
34
vasculature
30
eye
18
ureter
15
nerve
13
artery
12
epithelium
12
skeleton
10
spleen
pericardium
1
pituitary gland
Project
1554
AMP
2
T1D
Genome assembly (visualization)
1617
GRCh38
1556
hg19
Lab
1513
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
pericardium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1556 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
21
1
42
2
1
6
1
liver
147
73
2
20
1
1
1
bone tissue
58
heart
4
4
16
1
1
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