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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
90
ChIP-seq
21
ATAC-seq
3
DNase-seq
3
small RNA-seq
1
Hi-C
1
RRBS
Assay category
152
Transcription
90
DNA binding
24
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
50
histone modification
49
histone
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
1
control
Date released
170
May, 2020
36
December, 2017
20
August, 2017
20
May, 2022
7
July, 2019
7
November, 2018
6
October, 2019
2
March, 2020
Available data
265
bigWig
246
bam
152
tsv
113
bed narrowPeak
63
fastq
49
bigBed narrowPeak
27
tagAlign
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
268
Homo sapiens
Biosample type
330
cell line
268
tissue
14
in vitro differentiated cells
13
primary cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
0
gonad
Project
268
AMP
Genome assembly (visualization)
268
hg19
238
GRCh38
Lab
248
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
268 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
tissue
liver
147
83
20
2
1
1
1
right lobe of liver
2
7
1
1
2
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