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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
5
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
44
February, 2023
40
May, 2021
23
August, 2017
21
May, 2022
20
August, 2021
19
July, 2019
16
March, 2020
9
October, 2019
5
February, 2021
3
March, 2019
3
October, 2022
2
January, 2018
2
November, 2019
1
April, 2019
1
November, 2017
1
October, 2017
Available data
bam
206
bigWig
189
bed narrowPeak
69
bigBed narrowPeak
40
tagAlign
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
9
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
tissue
1
cell line
1
primary cell
Organ
3
connective tissue
2
brain
adipose tissue
1
blood vessel
1
epithelium
1
heart
1
pancreas
1
vasculature
1
vein
Project
9
AMP
Genome assembly (visualization)
9
hg19
3
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
csv
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Hi-C
ATAC-seq
ChIP-seq
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
tissue
dorsal plus ventral thalamus
1
heart
1
planum polare
1
cell line
Panc1
1
primary cell
endothelial cell of umbilical vein
1
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