Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
14
ChIP-seq
6
Hi-C
2
ATAC-seq
2
Capture-C
Assay category
15
DNA methylation
14
DNA binding
6
3D chromatin structure
2
DNA accessibility
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
45
February, 2023
40
May, 2021
24
August, 2017
21
May, 2022
20
August, 2021
19
July, 2019
16
March, 2020
10
October, 2019
5
February, 2021
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2019
1
April, 2019
1
May, 2023
1
November, 2017
1
October, 2017
Available data
122
bigWig
bam
80
tsv
48
bed narrowPeak
15
bed bedMethyl
15
bigBed bedMethyl
15
tagAlign
9
bed bed3+
4
hdf5
2
bigBed narrowPeak
2
hic
1
bedpe bed3+
Organism
39
Homo sapiens
Biosample type
15
cell line
13
primary cell
7
tissue
4
in vitro differentiated cells
Organ
17
liver
8
epithelium
6
connective tissue
5
brain
5
kidney
3
vasculature
2
blood vessel
2
heart
2
pancreas
1
eye
1
musculature of body
1
pericardium
Project
39
AMP
Genome assembly (visualization)
64
GRCh38
39
hg19
Lab
19
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
RRBS
ChIP-seq
Hi-C
ATAC-seq
Capture-C
cell line
HepG2
14
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
tissue
kidney
1
1
brain
1
heart left ventricle
1
islet of Langerhans
1
pancreas
1
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
See all biosamples
Download