Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 89ATAC-seq
  • 71ChIP-seq
  • 27Hi-C
  • 19RRBS
  • 3pCHi-C
  • 3total RNA-seq
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 90DNA accessibility
  • 71DNA binding
  • 273D chromatin structure
  • 19DNA methylation
  • 3Transcription
Target of assay
  • 57histone
  • 57histone modification
  • 33broad histone mark
  • 24narrow histone mark
  • 11transcription factor
  • 3control
  • 1RNA binding protein
Date released
  • 45February, 2023
  • 40May, 2021
  • 24August, 2017
  • 21May, 2022
  • 20August, 2021
  • 19July, 2019
  • 16March, 2020
  • 10October, 2019
  • 5February, 2021
  • 3January, 2018
  • 3March, 2019
  • 3October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1May, 2023
  • 1November, 2017
  • 1October, 2017
Available data
  • 3016bigWig
  • bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 215Homo sapiens
Biosample type
  • 107tissue
  • 54primary cell
  • 33in vitro differentiated cells
  • 21cell line
Organ
  • 40liver
  • 28epithelium
  • 28eye
  • 26connective tissue
  • 23pancreas
  • 20musculature of body
  • 9brain
  • 6heart
  • 6vasculature
  • 5adipose tissue
  • 5blood vessel
  • 5kidney
  • 4bone element
  • 4skeleton
  • 2vein
  • 1blood
  • 1bodily fluid
  • 1pericardium
Project
  • 212AMP
  • 3HPAP
Genome assembly (visualization)
  • 215hg19
  • 168GRCh38
  • 5hg18
Lab
  • 125AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 14inconsistent ontology term
  • 5audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

215 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
Capture-C
snATAC-seq
tissue
liver2011
skeletal muscle tissue11321
retina15
islet of Langerhans5621
pigmented layer of retina12
primary cell
CD8-positive, alpha-beta T cell332
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
in vitro differentiated cells
adipocyte81
embryonic stem cell6
chondrocyte5
cardiomyocytes (cardiac muscle cell)21
immature adipocyte2
cell line
HepG21411
EndoC_BH121
GM128781
Panc11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego