Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
423
ChIP-seq
159
total RNA-seq
23
ATAC-seq
3
small RNA-seq
2
Hi-C
2
RRBS
Assay category
423
DNA binding
162
Transcription
23
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
327
transcription factor
80
histone modification
79
histone
78
recombinant protein
55
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
46
November, 2018
20
May, 2022
17
August, 2017
15
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2021
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
612
Homo sapiens
Biosample type
329
cell line
262
tissue
14
in vitro differentiated cells
7
primary cell
Organ
631
pancreas
612
liver
563
connective tissue
420
adipose tissue
296
epithelium
161
heart
153
vasculature
149
blood vessel
139
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
39
musculature of body
30
eye
29
nerve
26
embryo
15
vein
13
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
612
AMP
Genome assembly (visualization)
612
hg19
520
GRCh38
Lab
577
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
thymus
BIOSAMPLE
ASSAY
612 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
cell line
HepG2
322
5
1
1
tissue
liver
80
147
20
1
1
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
Download