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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
55
DNase-seq
9
total RNA-seq
6
small RNA-seq
5
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
snATAC-seq
Assay category
150
DNA binding
59
DNA accessibility
18
Transcription
5
3D chromatin structure
Target of assay
144
histone
144
histone modification
103
narrow histone mark
41
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
61
June, 2019
31
May, 2019
19
July, 2019
15
November, 2017
13
August, 2017
6
October, 2017
4
March, 2020
2
November, 2018
1
February, 2023
1
January, 2018
1
May, 2022
Available data
226
bigWig
208
bam
201
bed narrowPeak
112
bigBed narrowPeak
83
bed broadPeak
61
bigBed broadPeak
59
bed bed3+
56
tagAlign
19
fastq
18
tsv
bed bedMethyl
5
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
232
Homo sapiens
Biosample type
201
tissue
31
primary cell
Organ
656
pancreas
623
liver
588
connective tissue
426
adipose tissue
305
epithelium
186
heart
164
vasculature
162
brain
159
blood vessel
125
kidney
96
limb
93
artery
70
bone element
70
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
232
AMP
Genome assembly (visualization)
269
GRCh38
232
hg19
Lab
232
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
snATAC-seq
tissue
brain
11
14
1
1
muscle of leg
6
13
muscle of arm
17
skeletal muscle tissue
13
1
1
1
1
temporal lobe
13
1
1
+ See 72 more…
primary cell
skeletal muscle satellite cell
7
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
+ See 4 more…
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