Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
429
ChIP-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
2
RRBS
1
pCHi-C
Assay category
429
DNA binding
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
50
December, 2017
49
November, 2018
27
May, 2020
20
August, 2017
20
May, 2022
18
August, 2021
6
October, 2019
2
February, 2021
2
July, 2019
2
June, 2019
1
March, 2020
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
463
Homo sapiens
Biosample type
325
cell line
116
tissue
14
in vitro differentiated cells
8
primary cell
Organ
463
liver
250
pancreas
164
epithelium
152
brain
118
heart
117
kidney
111
connective tissue
107
vasculature
101
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
28
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
463
AMP
Genome assembly (visualization)
463
hg19
369
GRCh38
Lab
428
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bedgraph
tsv
organ_slims!
ovary
BIOSAMPLE
ASSAY
463 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
322
1
1
1
tissue
liver
83
20
2
1
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download