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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
17
ChIP-seq
12
total RNA-seq
1
RRBS
Assay category
27
DNA accessibility
17
DNA binding
12
Transcription
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
1
control
Date released
27
February, 2023
10
February, 2018
9
December, 2017
8
August, 2021
2
June, 2019
May, 2021
1
July, 2019
Available data
47
bed narrowPeak
33
bam
32
bigWig
19
fastq
12
tsv
7
bed bed3+
6
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
27
tissue
19
in vitro differentiated cells
8
cell line
3
primary cell
Organ
597
pancreas
579
connective tissue
562
liver
423
adipose tissue
286
epithelium
158
heart
149
vasculature
147
blood vessel
127
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
30
eye
29
nerve
27
embryo
27
musculature of body
13
spleen
13
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
57
AMP
Genome assembly (visualization)
57
hg19
29
GRCh38
1
hg18
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
May, 2021
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
RRBS
tissue
retina
15
pigmented layer of retina
12
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
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