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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
108
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
105
histone
105
histone modification
84
narrow histone mark
21
broad histone mark
6
control
Date released
78
October, 2019
25
May, 2019
17
July, 2019
3
November, 2017
3
October, 2017
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
127
Homo sapiens
Biosample type
117
tissue
10
primary cell
Organ
640
pancreas
580
connective tissue
562
liver
423
adipose tissue
295
epithelium
161
heart
149
vasculature
147
blood vessel
127
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
30
eye
29
embryo
29
nerve
27
musculature of body
13
spleen
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
127
AMP
Genome assembly (visualization)
171
GRCh38
127
hg19
Lab
127
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
temporal lobe
13
1
1
angular gyrus
14
brain
8
1
1
1
superior frontal gyrus
4
frontal cortex
1
1
1
+ See 63 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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