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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
20
ChIP-seq
3
small RNA-seq
2
Hi-C
1
RRBS
1
pCHi-C
Assay category
157
Transcription
20
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
14
control
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
143
May, 2020
19
November, 2017
7
July, 2019
5
January, 2019
2
August, 2017
2
March, 2020
1
August, 2021
1
February, 2021
1
October, 2019
Available data
593
bigWig
561
bam
bed narrowPeak
376
fastq
339
bigBed narrowPeak
157
tsv
62
bed broadPeak
62
bigBed broadPeak
39
tagAlign
8
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
155
tissue
26
cell line
Organ
515
connective tissue
446
pancreas
413
adipose tissue
188
liver
epithelium
75
heart
68
vasculature
66
blood vessel
62
bone element
54
artery
23
brain
17
kidney
15
embryo
13
musculature of body
4
limb
4
nerve
4
skeleton
4
vein
2
pericardium
1
blood
1
bodily fluid
1
eye
Project
181
AMP
Genome assembly (visualization)
181
hg19
159
GRCh38
Lab
180
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
181 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
liver
147
1
1
1
1
right lobe of liver
2
2
cell line
HepG2
5
19
1
1
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