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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 106single cell RNA-seq
  • 82ATAC-seq
  • 77ChIP-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 83DNA accessibility
  • 77DNA binding
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 32control
  • 27transcription factor
  • 21histone
  • 21histone modification
  • 13narrow histone mark
  • 8broad histone mark
  • 1RNA binding protein
Date released
  • 551February, 2021
  • 233May, 2020
  • 183May, 2021
  • 164July, 2018
  • 134August, 2017
  • 84July, 2019
  • 49April, 2018
  • 29March, 2020
  • 28October, 2019
  • 26September, 2018
  • 22November, 2017
  • 22November, 2019
  • 19August, 2021
  • 15February, 2018
  • 15February, 2023
  • 5December, 2017
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2October, 2018
  • 2September, 2017
  • 1May, 2022
  • 1May, 2023
  • 1October, 2017
Available data
  • 3016bigWig
  • 2998bam
  • bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1615Homo sapiens
Biosample type
  • 978tissue
  • 340primary cell
  • 166in vitro differentiated cells
  • 130cell line
  • 1stem cell
Organ
  • 515connective tissue
  • 446pancreas
  • 413adipose tissue
  • 188liver
  • 166epithelium
  • 75heart
  • 68vasculature
  • 66blood vessel
  • 62bone element
  • 54artery
  • 23brain
  • 17kidney
  • 15embryo
  • 13musculature of body
  • 4limb
  • 4nerve
  • 4skeleton
  • 4vein
  • 2pericardium
  • 1blood
  • 1bodily fluid
  • 1eye
Project
  • 1514AMP
  • 98T1D
  • 3HPAP
Genome assembly (visualization)
  • 1615hg19
  • 1495GRCh38
  • 5hg18
Lab
  • 1497AMP-T2D consortium
  • 106Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 3Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 151inconsistent ontology term
  • 5audit script error
Audit category:
  • 38missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1615 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3822
islet of Langerhans260651121
liver1471111
bone tissue58
white adipose tissue12
primary cell
monocyte532
pancreatic alpha cell10121
pancreatic beta cell10121
pancreatic acinar cell4121
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
adipocyte4761
induced pluripotent stem cell9
embryonic stem cell25
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13321
HepG251911
H1-hESC8
early embryonic cell2
stem cell
hESC1
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