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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
66
total RNA-seq
25
DNase-seq
12
ATAC-seq
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
71
DNA binding
67
Transcription
37
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
11
transcription factor
5
RNA binding protein
Date released
64
February, 2021
47
April, 2019
25
June, 2019
15
May, 2019
14
July, 2019
8
October, 2019
4
March, 2020
2
May, 2021
Available data
174
bam
167
bigWig
108
bed narrowPeak
86
bigBed narrowPeak
67
tsv
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
4
tagAlign
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
179
Homo sapiens
Biosample type
113
tissue
64
cell line
2
primary cell
Organ
657
pancreas
623
liver
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
12
skeleton
11
spleen
2
pericardium
1
pituitary gland
Project
179
AMP
Genome assembly (visualization)
257
GRCh38
179
hg19
Lab
179
AMP-T2D consortium
files.file_type!
bedpe
organ_slims!
connective tissue
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
3
3
2
1
1
heart
12
4
16
1
1
heart right ventricle
11
1
1
1
right atrium auricular region
7
2
2
1
coronary artery
3
2
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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