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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 560ChIP-seq
  • 234ATAC-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 560DNA binding
  • 235DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 445histone modification
  • 444histone
  • 278narrow histone mark
  • 165broad histone mark
  • 86transcription factor
  • 32control
  • 8RNA binding protein
  • 7recombinant protein
  • 2chromatin remodeller
Date released
  • 574February, 2021
  • 316May, 2021
  • 260May, 2020
  • 234August, 2017
  • 164July, 2018
  • 147October, 2019
  • 89July, 2019
  • 60August, 2021
  • 59November, 2019
  • 58September, 2018
  • 49April, 2018
  • 45February, 2023
  • 39May, 2022
  • 32March, 2020
  • 31February, 2018
  • 27December, 2017
  • 23November, 2017
  • 7October, 2017
  • 5December, 2019
  • 5January, 2019
  • 5November, 2020
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2October, 2018
  • 2September, 2017
  • 1April, 2019
  • 1May, 2023
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2250Homo sapiens
Biosample type
  • 1262tissue
  • 526primary cell
  • 280in vitro differentiated cells
  • 179cell line
  • 3stem cell
Organ
  • 569pancreas
  • 562connective tissue
  • 416adipose tissue
  • 271liver
  • 241epithelium
  • 99brain
  • 97heart
  • 83vasculature
  • 81blood vessel
  • 70bone element
  • 68artery
  • 32kidney
  • 29embryo
  • 28eye
  • 26musculature of body
  • 12limb
  • 12skeleton
  • 5nerve
  • 4vein
  • 2pericardium
  • 1blood
  • 1bodily fluid
  • 1pituitary gland
  • 1spleen
Project
  • 2061AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2250hg19
  • 2129GRCh38
  • 5hg18
Lab
  • 1962AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 190inconsistent ontology term
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 71missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

2250 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3822
islet of Langerhans2603142621
liver1474520111
bone tissue58
skeletal muscle tissue1131211
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell107121
pancreatic beta cell107121
pancreatic ductal cell41310
in vitro differentiated cells
cardiomyocytes593
adipocyte44861
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH1331331
HepG2533111
H1-hESC8
RCC 7860 HIF1a re-expression13
stem cell
hESC3
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