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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ATAC-seq
6
Hi-C
6
RRBS
1
ChIP-seq
Assay category
14
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
DNA binding
Target of assay
1
control
Date released
12
February, 2023
6
July, 2019
3
October, 2022
2
November, 2019
2
October, 2019
1
December, 2017
1
March, 2020
Available data
bigWig
310
bam
190
fastq
161
tsv
157
bed narrowPeak
70
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
Organism
27
Homo sapiens
Biosample type
12
primary cell
12
tissue
2
cell line
1
in vitro differentiated cells
Organ
51
pancreas
28
eye
26
epithelium
22
connective tissue
13
heart
12
bone element
12
skeleton
12
vasculature
11
blood vessel
8
artery
8
liver
6
limb
6
musculature of body
5
brain
5
kidney
3
adipose tissue
2
vein
1
embryo
1
pericardium
Project
24
AMP
3
HPAP
Genome assembly (visualization)
27
hg19
3
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
4
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
27 results
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ATAC-seq
Hi-C
RRBS
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
Liver fetal (hepatocyte)
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
tissue
pigmented layer of retina
12
cell line
EndoC_BH1
1
1
in vitro differentiated cells
pancreatic endoderm
1
See all biosamples
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