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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 137ATAC-seq
  • 22Hi-C
  • 19RRBS
  • 11ChIP-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
  • 1total RNA-seq
Assay category
  • 138DNA accessibility
  • 223D chromatin structure
  • 19DNA methylation
  • 11DNA binding
  • 1Transcription
Target of assay
  • 9control
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 42February, 2023
  • 28November, 2019
  • 23February, 2021
  • 19May, 2022
  • 15July, 2019
  • 14August, 2021
  • 13May, 2021
  • 12March, 2020
  • 10October, 2019
  • 6August, 2017
  • 5December, 2017
  • 3March, 2019
  • 3October, 2022
  • 2September, 2017
  • 1May, 2023
  • 1November, 2020
Available data
  • bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 197Homo sapiens
Biosample type
  • 108tissue
  • 43in vitro differentiated cells
  • 32primary cell
  • 13cell line
  • 1stem cell
Organ
  • 51pancreas
  • 28eye
  • 26epithelium
  • 22connective tissue
  • 13heart
  • 12bone element
  • 12skeleton
  • 12vasculature
  • 11blood vessel
  • 8artery
  • 8liver
  • 6limb
  • 6musculature of body
  • 5brain
  • 5kidney
  • 3adipose tissue
  • 2vein
  • 1embryo
  • 1pericardium
Project
  • 194AMP
  • 3HPAP
Genome assembly (visualization)
  • 197GRCh38
  • 197hg19
Lab
  • 169AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 22inconsistent ontology term
  • 5audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

197 results

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Clear Filters
ATAC-seq
Hi-C
RRBS
ChIP-seq
pCHi-C
Capture-C
snATAC-seq
total RNA-seq
tissue
islet of Langerhans39212
retina15
pigmented layer of retina12
liver111
skeletal muscle tissue21
in vitro differentiated cells
neural progenitor cell10
adipocyte511
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cardiomyocytes (cardiac muscle cell)121
primary cell
monocyte13
endothelial cell of umbilical vein2
osteoblast11
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
cell line
smooth muscle cell of the coronary artery8
HepG2111
EndoC_BH111
stem cell
hESC1
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