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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
20
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
108
DNA binding
22
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
108
histone
108
histone modification
88
narrow histone mark
20
broad histone mark
3
control
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
6
November, 2017
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
147
Homo sapiens
Biosample type
135
tissue
12
primary cell
Organ
516
connective tissue
405
adipose tissue
281
pancreas
235
liver
188
heart
159
vasculature
156
blood vessel
147
brain
138
epithelium
129
kidney
96
limb
93
artery
71
musculature of body
70
bone element
34
eye
31
nerve
18
ureter
17
vein
12
skeleton
10
embryo
2
pericardium
1
blood
1
bodily fluid
1
pituitary gland
Project
147
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
147
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
month_released!
June, 2018
October, 2018
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
5
12
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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