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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1140total RNA-seq
  • 601ChIP-seq
  • 212ATAC-seq
  • 174DNase-seq
  • 27Hi-C
  • 18small RNA-seq
  • 15RRBS
  • 8single cell RNA-seq
  • 4pCHi-C
  • 3FAIRE-seq
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1166Transcription
  • 601DNA binding
  • 390DNA accessibility
  • 273D chromatin structure
  • 15DNA methylation
Target of assay
  • 556histone
  • 556histone modification
  • 302narrow histone mark
  • 254broad histone mark
  • 42transcription factor
  • 14RNA binding protein
  • 7recombinant protein
  • 6control
Date released
  • 574February, 2021
  • 316May, 2021
  • 260May, 2020
  • 217October, 2019
  • 187June, 2019
  • 114July, 2018
  • 97May, 2019
  • 91July, 2019
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 45February, 2023
  • 32March, 2020
  • 21August, 2017
  • 21May, 2022
  • 14October, 2018
  • 6November, 2017
  • 6November, 2020
  • 5April, 2018
  • 5December, 2019
  • 3January, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2205Homo sapiens
Biosample type
  • 1461tissue
  • 402primary cell
  • 179in vitro differentiated cells
  • 163cell line
Organ
  • 516connective tissue
  • 405adipose tissue
  • 295pancreas
  • 235liver
  • 188heart
  • 159vasculature
  • 156blood vessel
  • 147brain
  • 138epithelium
  • 129kidney
  • 96limb
  • 93artery
  • 71musculature of body
  • 70bone element
  • 34eye
  • 31nerve
  • 18ureter
  • 17vein
  • 12skeleton
  • 10embryo
  • 2pericardium
  • 1blood
  • 1bodily fluid
  • 1pituitary gland
Project
  • 2016AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2205hg19
  • 2176GRCh38
Lab
  • 1936AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 205inconsistent ontology term
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2205 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
single cell RNA-seq
pCHi-C
FAIRE-seq
Capture-C
snATAC-seq
tissue
adipose tissue3823
islet of Langerhans16982321
liver147322011
bone tissue58
heart left ventricle3292311
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
endothelial cell of umbilical vein12221
epithelial cell of proximal tubule1811
hepatocyte5311
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
adipocyte481
induced pluripotent stem cell9
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH1331331
HepG214111
H1-hESC8
Panc1611
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